Mechanical unfolding of a simple model protein goes beyond the reach of one-dimensional descriptions.

نویسندگان

  • R Tapia-Rojo
  • S Arregui
  • J J Mazo
  • F Falo
چکیده

We study the mechanical unfolding of a simple model protein. The Langevin dynamics results are analyzed using Markov-model methods which allow to describe completely the configurational space of the system. Using transition-path theory we also provide a quantitative description of the unfolding pathways followed by the system. Our study shows a complex dynamical scenario. In particular, we see that the usual one-dimensional picture: free-energy vs end-to-end distance representation, gives a misleading description of the process. Unfolding can occur following different pathways and configurations which seem to play a central role in one-dimensional pictures are not the intermediate states of the unfolding dynamics.

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عنوان ژورنال:
  • The Journal of chemical physics

دوره 141 13  شماره 

صفحات  -

تاریخ انتشار 2014